move to own git serverHEADmaster

3 files changed, 65 insertions, 0 deletions

diff --git a/vcpkg/ports/htscodecs/0001-no-tests.patch b/vcpkg/ports/htscodecs/0001-no-tests.patch
new file mode 100644
index 0000000..e18dd50
--- /dev/null
+++ b/vcpkg/ports/htscodecs/0001-no-tests.patch
@@ -0,0 +1,13 @@
+diff --git a/tests/Makefile.am b/tests/Makefile.am
+index 873ad3e..0ab3638 100644
+--- a/tests/Makefile.am
++++ b/tests/Makefile.am
+@@ -31,7 +31,7 @@
+ # 
+ 
+ # Standalone test programs
+-noinst_PROGRAMS = rans4x16pr tokenise_name3 arith_dynamic rans4x8 rans4x16pr fqzcomp_qual varint entropy
++check_PROGRAMS = rans4x16pr tokenise_name3 arith_dynamic rans4x8 rans4x16pr fqzcomp_qual varint entropy
+ 
+ LDADD = $(top_builddir)/htscodecs/libhtscodecs.la
+ AM_CPPFLAGS = -I$(top_srcdir)
diff --git a/vcpkg/ports/htscodecs/portfile.cmake b/vcpkg/ports/htscodecs/portfile.cmake
new file mode 100644
index 0000000..f18b438
--- /dev/null
+++ b/vcpkg/ports/htscodecs/portfile.cmake
@@ -0,0 +1,36 @@
+vcpkg_from_github(

+    OUT_SOURCE_PATH SOURCE_PATH

+    REPO samtools/htscodecs

+    REF "v${VERSION}"

+    SHA512 5e3e1f916cb14fe7e1292f3a07e9d9704b11be38014db5884b334235c25dbe61dffecf3f12c448a7a13f65c6d19dbc7cc5c77ba0861b31a0375d71030dd02480

+    HEAD_REF master

+    PATCHES

+        0001-no-tests.patch # https://github.com/samtools/htscodecs/pull/120

+)

+

+set(FEATURE_OPTIONS "")

+

+macro(enable_feature feature switch)

+    if("${feature}" IN_LIST FEATURES)

+        list(APPEND FEATURE_OPTIONS "--enable-${switch}")

+    else()

+        list(APPEND FEATURE_OPTIONS "--disable-${switch}")

+    endif()

+endmacro()

+

+enable_feature("bzip2" "bz2")

+

+vcpkg_configure_make(

+    AUTOCONFIG

+    SOURCE_PATH "${SOURCE_PATH}"

+    OPTIONS

+        ${FEATURE_OPTIONS}

+)

+

+vcpkg_install_make()

+

+file(REMOVE_RECURSE "${CURRENT_PACKAGES_DIR}/debug/share")

+

+vcpkg_fixup_pkgconfig()

+

+vcpkg_install_copyright(FILE_LIST "${SOURCE_PATH}/LICENSE.md")

diff --git a/vcpkg/ports/htscodecs/vcpkg.json b/vcpkg/ports/htscodecs/vcpkg.json
new file mode 100644
index 0000000..ea583f6
--- /dev/null
+++ b/vcpkg/ports/htscodecs/vcpkg.json
@@ -0,0 +1,16 @@
+{
+  "name": "htscodecs",
+  "version": "1.6.1",
+  "description": "Custom compression for CRAM and others.",
+  "homepage": "https://github.com/samtools/htscodecs",
+  "license": "MIT",
+  "supports": "!windows",
+  "features": {
+    "bzip2": {
+      "description": "Enable support for BZ2 within Arith streams",
+      "dependencies": [
+        "bzip2"
+      ]
+    }
+  }
+}