move to own git serverHEADmaster

6 files changed, 210 insertions, 0 deletions

diff --git a/vcpkg/ports/minc/avoid-try-run.diff b/vcpkg/ports/minc/avoid-try-run.diff
new file mode 100644
index 0000000..5353a6c
--- /dev/null
+++ b/vcpkg/ports/minc/avoid-try-run.diff
@@ -0,0 +1,17 @@
+diff --git a/CMakeLists.txt b/CMakeLists.txt
+index dcd594b..a357b90 100644
+--- a/CMakeLists.txt
++++ b/CMakeLists.txt
+@@ -174,6 +174,12 @@ ELSE(HAVE_CLOCK_GETTIME_RT)
+   CHECK_SYMBOL_EXISTS(clock_gettime "time.h" HAVE_CLOCK_GETTIME_SYMBOL)
+   # then check that it's available
+   IF(HAVE_CLOCK_GETTIME_SYMBOL)
++    if(CMAKE_CROSSCOMPILING)
++      # Seed try_run results. Override in triplet if needed.
++      set(HAVE_CLOCK_GETTIME_RUN 0 CACHE STRING "")
++      set(CMAKE_TRY_COMPILE_TARGET_TYPE EXECUTABLE)
++      try_compile(HAVE_CLOCK_GETTIME_COMP SOURCES ${CMAKE_CURRENT_SOURCE_DIR}/check_clock_gettime.c)
++    endif()
+     TRY_RUN(HAVE_CLOCK_GETTIME_RUN HAVE_CLOCK_GETTIME_COMP
+             ${CMAKE_CURRENT_BINARY_DIR}
+             ${CMAKE_CURRENT_SOURCE_DIR}/check_clock_gettime.c
diff --git a/vcpkg/ports/minc/build.patch b/vcpkg/ports/minc/build.patch
new file mode 100644
index 0000000..40f4df6
--- /dev/null
+++ b/vcpkg/ports/minc/build.patch
@@ -0,0 +1,43 @@
+diff --git a/CMakeLists.txt b/CMakeLists.txt
+index caf681a..58b7648 100644
+--- a/CMakeLists.txt
++++ b/CMakeLists.txt
+@@ -3,6 +3,8 @@
+ # Andrew Janke - a.janke@gmail.com
+ # Vladimir S. FONOV - vladimir.fonov@gmail.com
+ 
++CMAKE_MINIMUM_REQUIRED(VERSION 3.6...3.10)
++
+ PROJECT(LIBMINC)
+ 
+ SET(LIBMINC_PACKAGE_VERSION_MAJOR 2)
+@@ -22,8 +24,6 @@ INCLUDE(CTest)
+ 
+ ENABLE_TESTING()
+ 
+-CMAKE_MINIMUM_REQUIRED(VERSION 3.6)
+-
+ IF( POLICY CMP0063 )
+   CMAKE_POLICY(SET CMP0063 NEW)
+ ENDIF()
+@@ -445,6 +445,11 @@ IF(UNIX)
+   SET(LIBMINC_STATIC_LIBRARIES_CONFIG ${LIBMINC_STATIC_LIBRARIES_CONFIG} m dl ${RT_LIBRARY_NAME})
+ ENDIF(UNIX)
+ 
++if(WIN32)
++  add_definitions(-DMNCAPI=)
++  list(APPEND LIBMINC_LIBRARIES_CONFIG ws2_32)
++endif()
++
+ SET(minc_LIB_SRCS ${minc2_LIB_SRCS} ${minc_common_SRCS})
+ SET(minc_HEADERS  ${minc2_HEADERS} ${minc_common_HEADERS})
+ 
+@@ -513,7 +518,7 @@ IF( LIBMINC_INSTALL_LIB_DIR )
+       ${LIBMINC_EXPORTED_TARGETS} 
+     LIBRARY DESTINATION ${LIBMINC_INSTALL_LIB_DIR} COMPONENT libraries
+     ARCHIVE DESTINATION ${LIBMINC_INSTALL_LIB_DIR} COMPONENT libraries
+-    RUNTIME DESTINATION ${LIBMINC_INSTALL_LIB_DIR} COMPONENT libraries
++    RUNTIME DESTINATION ${LIBMINC_INSTALL_BIN_DIR} COMPONENT libraries
+   )
+ ENDIF( LIBMINC_INSTALL_LIB_DIR )
+ 
diff --git a/vcpkg/ports/minc/cmake-config.patch b/vcpkg/ports/minc/cmake-config.patch
new file mode 100644
index 0000000..6588995
--- /dev/null
+++ b/vcpkg/ports/minc/cmake-config.patch
@@ -0,0 +1,62 @@
+diff --git a/CMakeLists.txt b/CMakeLists.txt
+index a80e172..dcd594b 100644
+--- a/CMakeLists.txt
++++ b/CMakeLists.txt
+@@ -63,13 +63,19 @@ IF(NOT LIBMINC_EXTERNALLY_CONFIGURED)
+   SET (LIBMINC_INSTALL_DATA_DIR share)
+ 
+   IF(LIBMINC_MINC1_SUPPORT)
+-    FIND_PACKAGE(NETCDF REQUIRED)
++    find_package(netCDF CONFIG REQUIRED)
++    set(NETCDF_LIBRARY netCDF::netcdf)
+   ENDIF(LIBMINC_MINC1_SUPPORT)
+ 
+   # external packages
+   FIND_PACKAGE(ZLIB REQUIRED)
+-  SET(HDF5_NO_FIND_PACKAGE_CONFIG_FILE ON)
+-  FIND_PACKAGE(HDF5 REQUIRED COMPONENTS C )
++  set(ZLIB_LIBRARY ZLIB::ZLIB)
++  find_package(hdf5 CONFIG REQUIRED)
++  if (TARGET hdf5::hdf5-shared)
++      SET(HDF5_LIBRARIES hdf5::hdf5-shared)
++  elseif (TARGET hdf5::hdf5-static)
++      SET(HDF5_LIBRARIES hdf5::hdf5-static)
++  endif()
+   
+   IF(LIBMINC_USE_NIFTI)
+   IF (LIBMINC_USE_SYSTEM_NIFTI)
+@@ -533,7 +539,7 @@ ENDIF()
+ 
+ 
+ # config for install dir
+-SET(LIBMINC_USE_FILE_CONFIG     "\${LIBMINC_INSTALL_PREFIX}/lib/cmake/Use${LIBMINC_EXTERNAL_LIB_PREFIX}LIBMINC.cmake" )
++SET(LIBMINC_USE_FILE_CONFIG     "\${CMAKE_CURRENT_LIST_DIR}/Use${LIBMINC_EXTERNAL_LIB_PREFIX}LIBMINC.cmake" )
+ SET(LIBMINC_INCLUDE_DIRS_CONFIG "\${LIBMINC_INSTALL_PREFIX}/include" )
+ SET(LIBMINC_LIBRARY_DIRS_CONFIG "\${LIBMINC_INSTALL_PREFIX}/lib" )
+ SET(LIBMINC_STATIC_LIBRARIES_CONFIG   "" )
+diff --git a/LIBMINCConfig.cmake.in b/LIBMINCConfig.cmake.in
+index f8f7eb6..131f54f 100644
+--- a/LIBMINCConfig.cmake.in
++++ b/LIBMINCConfig.cmake.in
+@@ -1,5 +1,11 @@
+ # LIBMINC CMake configuration file
+ 
++include(CMakeFindDependencyMacro)
++find_dependency(ZLIB)
++find_dependency(hdf5 CONFIG)
++if("@LIBMINC_MINC1_SUPPORT@")
++    find_dependency(netCDF CONFIG)
++endif()
+ 
+ get_filename_component(LIBMINC_INSTALL_PREFIX "${CMAKE_CURRENT_LIST_DIR}/../../" ABSOLUTE)
+ get_filename_component(LIBMINC_CMAKE_DIR "${CMAKE_CURRENT_LIST_FILE}" PATH )
+@@ -21,7 +27,8 @@ set(LIBMINC_NIFTI_SUPPORT @LIBMINC_NIFTI_SUPPORT@)
+ #set(NIFTI_LIBRARIES    "@NIFTI_LIBRARIES@")
+ 
+ set(LIBMINC_INCLUDE_DIRS "@LIBMINC_INCLUDE_DIRS_CONFIG@") # ${LIBMINC_INSTALL_PREFIX}/include
+-set(LIBMINC_LIBRARY_DIRS "@LIBMINC_LIBRARY_DIRS_CONFIG@") # ${LIBMINC_INSTALL_PREFIX}/lib
++find_library(Z_VCPKG_LIBMINC_LIBRARY NAMES minc2 REQUIRED) # pick from vcpkg search paths
++get_filename_component(LIBMINC_LIBRARY_DIRS "${Z_VCPKG_LIBMINC_LIBRARY}" PATH)
+ set(LIBMINC_USE_FILE     "@LIBMINC_USE_FILE_CONFIG@") # ${LIBMINC_INSTALL_PREFIX}/lib/UseLIBMINC.cmake
+ 
+ set(LIBMINC_LIBRARIES    "@LIBMINC_LIBRARIES_CONFIG@")
diff --git a/vcpkg/ports/minc/portfile.cmake b/vcpkg/ports/minc/portfile.cmake
new file mode 100644
index 0000000..2606114
--- /dev/null
+++ b/vcpkg/ports/minc/portfile.cmake
@@ -0,0 +1,42 @@
+string(REGEX REPLACE "(release-[0-9][.][0-9])[.]([0-9])\$" "\\1.0\\2" git_tag "release-${VERSION}")
+vcpkg_from_github(
+    OUT_SOURCE_PATH SOURCE_PATH
+    REPO BIC-MNI/libminc
+    REF ${git_tag}
+    SHA512 78d5c14b82c8da5de7651de22fe47ae934925b27a626b8685b19554b7a35240eb5ab6d4da6232ce046e9e0f25619bbfae1d7c0fc34994d935986dc151d7b93a0
+    HEAD_REF master
+    PATCHES
+        avoid-try-run.diff
+        build.patch
+        cmake-config.patch
+)
+
+vcpkg_check_features(
+    OUT_FEATURE_OPTIONS FEATURE_OPTIONS
+    FEATURES
+        "minc1" LIBMINC_MINC1_SUPPORT
+)
+
+if(VCPKG_TARGET_IS_WINDOWS)
+    vcpkg_check_linkage(ONLY_STATIC_LIBRARY) # Symbols are not properly exported
+endif()
+
+string(COMPARE EQUAL "${VCPKG_LIBRARY_LINKAGE}" "dynamic" LIBMINC_BUILD_SHARED_LIBS)
+
+vcpkg_cmake_configure(
+    SOURCE_PATH "${SOURCE_PATH}"
+    OPTIONS
+        -DBUILD_TESTING=OFF
+        -DLIBMINC_BUILD_SHARED_LIBS=${LIBMINC_BUILD_SHARED_LIBS}
+        -DLIBMINC_USE_SYSTEM_NIFTI=ON
+        ${FEATURE_OPTIONS}
+)
+vcpkg_cmake_install()
+vcpkg_copy_pdbs()
+vcpkg_cmake_config_fixup(CONFIG_PATH lib/cmake PACKAGE_NAME libminc)
+
+file(REMOVE_RECURSE "${CURRENT_PACKAGES_DIR}/debug/share")
+file(REMOVE_RECURSE "${CURRENT_PACKAGES_DIR}/debug/include")
+
+file(INSTALL "${CURRENT_PORT_DIR}/usage" DESTINATION "${CURRENT_PACKAGES_DIR}/share/${PORT}")
+vcpkg_install_copyright(FILE_LIST "${SOURCE_PATH}/COPYING")
diff --git a/vcpkg/ports/minc/usage b/vcpkg/ports/minc/usage
new file mode 100644
index 0000000..1a4c1ce
--- /dev/null
+++ b/vcpkg/ports/minc/usage
@@ -0,0 +1,12 @@
+minc provides CMake integration:
+
+  find_package(LIBMINC CONFIG REQUIRED)
+  target_include_directories(main PRIVATE ${LIBMINC_INCLUDE_DIRS})
+  target_link_directories(main PRIVATE ${LIBMINC_LIBRARY_DIRS})
+  target_link_libraries(main PRIVATE ${LIBMINC_LIBRARIES})
+
+LIBMINC_LIBRARIES may include imported targets.
+Downstream CMake config may need to add:
+
+  include(CMakeFindDependencyMacro)
+  find_dependency(LIBMINC CONFIG)
diff --git a/vcpkg/ports/minc/vcpkg.json b/vcpkg/ports/minc/vcpkg.json
new file mode 100644
index 0000000..6537b60
--- /dev/null
+++ b/vcpkg/ports/minc/vcpkg.json
@@ -0,0 +1,34 @@
+{
+  "name": "minc",
+  "version": "2.4.6",
+  "description": "MINC - Medical Image NetCDF or MINC isn't netCDF",
+  "homepage": "https://github.com/BIC-MNI/libminc",
+  "license": null,
+  "dependencies": [
+    {
+      "name": "hdf5",
+      "default-features": false
+    },
+    "nifticlib",
+    {
+      "name": "vcpkg-cmake",
+      "host": true
+    },
+    {
+      "name": "vcpkg-cmake-config",
+      "host": true
+    },
+    "zlib"
+  ],
+  "features": {
+    "minc1": {
+      "description": "Support minc1 file format, requires NETCDF",
+      "dependencies": [
+        {
+          "name": "netcdf-c",
+          "default-features": false
+        }
+      ]
+    }
+  }
+}