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-rw-r--r--vcpkg/ports/libsbml/dependencies.diff143
-rw-r--r--vcpkg/ports/libsbml/dirent.diff28
-rw-r--r--vcpkg/ports/libsbml/libsbml-config.cmake6
-rw-r--r--vcpkg/ports/libsbml/no-docs.diff12
-rw-r--r--vcpkg/ports/libsbml/portfile.cmake84
-rw-r--r--vcpkg/ports/libsbml/test-shared.diff14
-rw-r--r--vcpkg/ports/libsbml/usage4
-rw-r--r--vcpkg/ports/libsbml/vcpkg.json96
8 files changed, 387 insertions, 0 deletions
diff --git a/vcpkg/ports/libsbml/dependencies.diff b/vcpkg/ports/libsbml/dependencies.diff
new file mode 100644
index 0000000..3a23ec2
--- /dev/null
+++ b/vcpkg/ports/libsbml/dependencies.diff
@@ -0,0 +1,143 @@
+diff --git a/CMakeLists.txt b/CMakeLists.txt
+index b2e97c6..5f5418d 100644
+--- a/CMakeLists.txt
++++ b/CMakeLists.txt
+@@ -435,8 +435,9 @@ set(LIBSBML_XML_LIBRARY_LIBS)
+ if(WITH_EXPAT)
+
+ if(NOT TARGET EXPAT::EXPAT)
+- find_package(EXPAT REQUIRED)
+ endif()
++ find_package(EXPAT NAMES expat REQUIRED)
++ set(EXPAT_LIBRARY expat::expat)
+
+ add_definitions( -DUSE_EXPAT )
+ list(APPEND SWIG_EXTRA_ARGS -DUSE_EXPAT)
+@@ -457,7 +458,8 @@ endif(WITH_EXPAT)
+ set(USE_LIBXML OFF)
+ if(WITH_LIBXML)
+
+- find_package(LIBXML REQUIRED)
++ find_package(LIBXML NAMES LibXml2 REQUIRED)
++ set(LIBXML_LIBRARY LibXml2::LibXml2)
+
+ add_definitions( -DUSE_LIBXML )
+ list(APPEND SWIG_EXTRA_ARGS -DUSE_LIBXML)
+@@ -509,7 +511,7 @@ endif()
+ option(WITH_BZIP2 "Enable the use of bzip2 compression." ${BZIP_INITIAL_VALUE})
+ set(USE_BZ2 OFF)
+ if(WITH_BZIP2)
+- find_package(BZ2 REQUIRED)
++ find_package(BZip2 REQUIRED)
+ set(USE_BZ2 ON)
+ add_definitions( -DUSE_BZ2 )
+ list(APPEND SWIG_EXTRA_ARGS -DUSE_BZ2)
+@@ -535,6 +537,9 @@ Separate multiple directories using semicolons." )
+ # Locate zlib
+ #
+
++if(WITH_ZLIB)
++ find_package(ZLIB REQUIRED)
++endif()
+ set(ZLIB_INITIAL_VALUE)
+ if (NOT LIBZ_LIBRARY)
+ find_library(LIBZ_LIBRARY
+@@ -628,7 +633,6 @@ valid. It should contain the file zlib.h, but it does not.")
+ endif(WITH_ZLIB)
+
+ # install find scripts only for used dependencies
+-install(FILES ${LIBSBML_FIND_MODULES} DESTINATION share/cmake/Modules)
+
+ ###############################################################################
+ #
+@@ -685,7 +689,12 @@ if(WITH_CHECK)
+
+ enable_testing()
+
+- find_package(CHECK REQUIRED)
++ find_package(CHECK NAMES check REQUIRED)
++ if(BUILD_SHARED_LIBS)
++ add_library(CHECK::CHECK ALIAS Check::checkShared)
++ else()
++ add_library(CHECK::CHECK ALIAS Check::check)
++ endif()
+
+ if (UNIX)
+ # setup valgrind
+@@ -1018,18 +1027,29 @@ install(FILES ${DOCUMENTATION_FILES} DESTINATION ${MISC_PREFIX})
+ # Write libsbml.pc
+ #
+
+-set (PRIVATE_LIBS "-lstdc++ -lm")
++set(FAKE_CXX_LINKAGE "")
++foreach(lib IN LISTS CMAKE_CXX_IMPLICIT_LINK_LIBRARIES)
++ if(lib IN_LIST CMAKE_C_IMPLICIT_LINK_LIBRARIES)
++ continue()
++ elseif(EXISTS "${lib}")
++ string(APPEND FAKE_CXX_LINKAGE " ${CMAKE_LINK_LIBRARY_FILE_FLAG}${lib}")
++ else()
++ string(APPEND FAKE_CXX_LINKAGE " ${CMAKE_LINK_LIBRARY_FLAG}${lib}")
++ endif()
++endforeach()
++set (PRIVATE_LIBS "${FAKE_CXX_LINKAGE}")
++set (PRIVATE_REQUIRES "")
+ if (WITH_ZLIB)
+-set (PRIVATE_LIBS "${LIBZ_LIBRARY} ${PRIVATE_LIBS}")
++ string(APPEND PRIVATE_REQUIRES " zlib")
+ endif()
+ if (WITH_BZIP2)
+-set (PRIVATE_LIBS "${LIBBZ_LIBRARY} ${PRIVATE_LIBS}")
++ string(APPEND PRIVATE_REQUIRES " bzip2")
+ endif()
+ if (WITH_LIBXML)
+-set (PRIVATE_LIBS "${LIBXML_LIBRARY} ${PRIVATE_LIBS}")
++ string(APPEND PRIVATE_REQUIRES " libxml-2.0")
+ endif()
+ if (WITH_EXPAT)
+-set (PRIVATE_LIBS "${LIBEXPAT_LIBRARY} ${PRIVATE_LIBS}")
++ string(APPEND PRIVATE_REQUIRES " expat")
+ endif()
+ if (WITH_XERCES)
+ set (PRIVATE_LIBS "${XERCES_LIBRARY} ${PRIVATE_LIBS}")
+@@ -1051,9 +1071,7 @@ if (WITH_XERCES)
+ file(APPEND "${CMAKE_CURRENT_BINARY_DIR}/libsbml.pc" "Conflicts: xerces-c = 2.6.0\n")
+ endif()
+
+-if (WITH_LIBXML)
+-file(APPEND "${CMAKE_CURRENT_BINARY_DIR}/libsbml.pc" "Requires.private: libxml-2.0 >= 2.6.22\n")
+-endif()
++file(APPEND "${CMAKE_CURRENT_BINARY_DIR}/libsbml.pc" "Requires.private: ${PRIVATE_REQUIRES}\n")
+
+ if (UNIX OR MINGW)
+ install(FILES "${CMAKE_CURRENT_BINARY_DIR}/libsbml.pc"
+diff --git a/src/CMakeLists.txt b/src/CMakeLists.txt
+index 79301a6..0957d29 100644
+--- a/src/CMakeLists.txt
++++ b/src/CMakeLists.txt
+@@ -311,7 +311,7 @@ if(WITH_BZIP2)
+ sbml/compress/bzfstream.h
+ sbml/compress/bzfstream.cpp
+ )
+- set(LIBSBML_LIBS ${LIBSBML_LIBS} BZ2::BZ2)
++ set(LIBSBML_LIBS ${LIBSBML_LIBS} BZip2::BZip2)
+
+ endif()
+
+@@ -405,7 +405,7 @@ if(WITH_EXPAT)
+ sbml/xml/ExpatHandler.h
+ sbml/xml/ExpatParser.h
+ )
+- set(LIBSBML_LIBS ${LIBSBML_LIBS} EXPAT::EXPAT)
++ set(LIBSBML_LIBS ${LIBSBML_LIBS} expat::expat)
+
+ endif(WITH_EXPAT)
+
+@@ -423,7 +423,7 @@ if(WITH_LIBXML)
+ sbml/xml/LibXMLParser.h
+ sbml/xml/LibXMLTranscode.h
+ )
+- set(LIBSBML_LIBS ${LIBSBML_LIBS} LIBXML::LIBXML)
++ set(LIBSBML_LIBS ${LIBSBML_LIBS} LibXml2::LibXml2)
+
+ endif(WITH_LIBXML)
+
diff --git a/vcpkg/ports/libsbml/dirent.diff b/vcpkg/ports/libsbml/dirent.diff
new file mode 100644
index 0000000..538bca3
--- /dev/null
+++ b/vcpkg/ports/libsbml/dirent.diff
@@ -0,0 +1,28 @@
+diff --git a/src/sbml/validator/test/tps/dirent.c b/src/sbml/validator/test/tps/dirent.c
+index beafc5e..48a60ca 100644
+--- a/src/sbml/validator/test/tps/dirent.c
++++ b/src/sbml/validator/test/tps/dirent.c
+@@ -1,3 +1,4 @@
++#if 0
+ /* /////////////////////////////////////////////////////////////////////////////
+ * File: dirent.c
+ *
+@@ -239,3 +240,4 @@ struct dirent *readdir(DIR *dir)
+ }
+
+ /* ////////////////////////////////////////////////////////////////////////// */
++#endif
+diff --git a/src/sbml/validator/test/tps/dirent.h b/src/sbml/validator/test/tps/dirent.h
+index 4703aa2..8e4c29c 100644
+--- a/src/sbml/validator/test/tps/dirent.h
++++ b/src/sbml/validator/test/tps/dirent.h
+@@ -46,6 +46,9 @@
+
+ #ifndef SYNSOFT_UNIXEM_INCL_H_DIRENT
+ #define SYNSOFT_UNIXEM_INCL_H_DIRENT
++#include <dirent.h>
++#endif
++#if 0
+
+ #ifndef _SYNSOFT_DOCUMENTATION_SKIP_SECTION
+ # define SYNSOFT_UNIXEM_VER_H_DIRENT_MAJOR 2
diff --git a/vcpkg/ports/libsbml/libsbml-config.cmake b/vcpkg/ports/libsbml/libsbml-config.cmake
new file mode 100644
index 0000000..c0cd40a
--- /dev/null
+++ b/vcpkg/ports/libsbml/libsbml-config.cmake
@@ -0,0 +1,6 @@
+include(CMakeFindDependencyMacro)
+find_dependency(@name@ CONFIG)
+if(NOT TARGET libsbml)
+ add_library(libsbml INTERFACE IMPORTED)
+ target_link_libraries(libsbml INTERFACE $<TARGET_NAME:@name@>)
+endif()
diff --git a/vcpkg/ports/libsbml/no-docs.diff b/vcpkg/ports/libsbml/no-docs.diff
new file mode 100644
index 0000000..acac8f3
--- /dev/null
+++ b/vcpkg/ports/libsbml/no-docs.diff
@@ -0,0 +1,12 @@
+diff --git a/CMakeLists.txt b/CMakeLists.txt
+index 8ad678a..f856774 100644
+--- a/CMakeLists.txt
++++ b/CMakeLists.txt
+@@ -1012,7 +1012,6 @@ set(DOCUMENTATION_FILES
+ VERSION.txt
+ )
+
+-install(FILES ${DOCUMENTATION_FILES} DESTINATION ${MISC_PREFIX})
+
+ ###############################################################################
+ #
diff --git a/vcpkg/ports/libsbml/portfile.cmake b/vcpkg/ports/libsbml/portfile.cmake
new file mode 100644
index 0000000..0afdd81
--- /dev/null
+++ b/vcpkg/ports/libsbml/portfile.cmake
@@ -0,0 +1,84 @@
+vcpkg_from_github(
+ OUT_SOURCE_PATH SOURCE_PATH
+ REPO sbmlteam/libsbml
+ REF "v${VERSION}"
+ SHA512 d4960b2ef12d00ae93ea883f945acf435a99763a0e2e751d94a15c7ff22fd41ff31cb16c1f37aa23257b3eb0de894201420962b008a6fe43ef0511fa2612846a
+ HEAD_REF development
+ PATCHES
+ dependencies.diff
+ dirent.diff
+ no-docs.diff
+ test-shared.diff
+)
+file(REMOVE
+ "${SOURCE_PATH}/CMakeModules/FindBZ2.cmake"
+ "${SOURCE_PATH}/CMakeModules/FindEXPAT.cmake"
+ "${SOURCE_PATH}/CMakeModules/FindLIBXML.cmake"
+ "${SOURCE_PATH}/CMakeModules/FindZLIB.cmake"
+)
+
+string(COMPARE EQUAL "${VCPKG_CRT_LINKAGE}" "static" STATIC_RUNTIME)
+
+if("expat" IN_LIST FEATURES AND "libxml2" IN_LIST FEATURES)
+ message(WARNING "Feature expat conflicts with feature libxml2. Selecting libxml2.")
+ list(REMOVE_ITEM FEATURES "expat")
+endif()
+
+vcpkg_check_features(OUT_FEATURE_OPTIONS FEATURE_OPTIONS
+ FEATURES
+ comp ENABLE_COMP
+ fbc ENABLE_FBC
+ groups ENABLE_GROUPS
+ layout ENABLE_LAYOUT
+ multi ENABLE_MULTI
+ qual ENABLE_QUAL
+ render ENABLE_RENDER
+ bzip2 WITH_BZIP2
+ expat WITH_EXPAT
+ libxml2 WITH_LIBXML
+ zlib WITH_ZLIB
+ test WITH_CHECK
+ namespace WITH_CPP_NAMESPACE
+)
+
+vcpkg_cmake_configure(
+ SOURCE_PATH "${SOURCE_PATH}"
+ OPTIONS
+ ${FEATURE_OPTIONS}
+ -DENABLE_L3V2EXTENDEDMATH:BOOL=ON
+ -DWITH_STATIC_RUNTIME=${STATIC_RUNTIME}
+ -DWITH_SWIG=OFF
+ MAYBE_UNUSED_VARIABLES
+ WITH_STATIC_RUNTIME
+)
+
+vcpkg_cmake_install()
+vcpkg_copy_pdbs()
+vcpkg_fixup_pkgconfig()
+
+foreach(name IN ITEMS libsbml libsbml-static sbml sbml-static)
+ if(EXISTS "${CURRENT_PACKAGES_DIR}/lib/cmake/${name}-config.cmake")
+ vcpkg_cmake_config_fixup(PACKAGE_NAME "${name}" CONFIG_PATH lib/cmake)
+ if(NOT EXISTS "${CURRENT_PACKAGES_DIR}/share/${PORT}/${PORT}-config.cmake")
+ configure_file("${CURRENT_PORT_DIR}/libsbml-config.cmake" "${CURRENT_PACKAGES_DIR}/share/${PORT}/${PORT}-config.cmake" @ONLY)
+ endif()
+ break()
+ endif()
+endforeach()
+
+if(VCPKG_LIBRARY_LINKAGE STREQUAL "static")
+ vcpkg_replace_string("${CURRENT_PACKAGES_DIR}/include/sbml/common/extern.h" "defined LIBSBML_STATIC" "1")
+ vcpkg_replace_string("${CURRENT_PACKAGES_DIR}/include/sbml/xml/XMLExtern.h" "defined(LIBLAX_STATIC)" "1")
+ if(NOT VCPKG_TARGET_IS_WINDOWS)
+ vcpkg_replace_string("${CURRENT_PACKAGES_DIR}/lib/pkgconfig/libsbml.pc" " -lsbml" " -lsbml-static")
+ if(NOT VCPKG_BUILD_TYPE)
+ vcpkg_replace_string("${CURRENT_PACKAGES_DIR}/debug/lib/pkgconfig/libsbml.pc" " -lsbml" " -lsbml-static")
+ endif()
+ endif()
+endif()
+
+file(REMOVE_RECURSE "${CURRENT_PACKAGES_DIR}/debug/include")
+file(REMOVE_RECURSE "${CURRENT_PACKAGES_DIR}/debug/share")
+
+file(INSTALL "${CMAKE_CURRENT_LIST_DIR}/usage" DESTINATION "${CURRENT_PACKAGES_DIR}/share/${PORT}")
+vcpkg_install_copyright(FILE_LIST "${SOURCE_PATH}/LICENSE.txt")
diff --git a/vcpkg/ports/libsbml/test-shared.diff b/vcpkg/ports/libsbml/test-shared.diff
new file mode 100644
index 0000000..71bc680
--- /dev/null
+++ b/vcpkg/ports/libsbml/test-shared.diff
@@ -0,0 +1,14 @@
+diff --git a/src/sbml/test/CMakeLists.txt b/src/sbml/test/CMakeLists.txt
+index 7a408d7..462d58a 100644
+--- a/src/sbml/test/CMakeLists.txt
++++ b/src/sbml/test/CMakeLists.txt
+@@ -49,6 +49,9 @@ if (EXTRA_INCLUDE_DIRS)
+ include_directories(${EXTRA_INCLUDE_DIRS})
+ endif(EXTRA_INCLUDE_DIRS)
+
++if(NOT TARGET ${LIBSBML_LIBRARY}-static)
++ add_library(${LIBSBML_LIBRARY}-static ALIAS ${LIBSBML_LIBRARY})
++endif()
+
+ add_executable(test_sbml_sbml ${TEST_FILES})
+ target_link_libraries(test_sbml_sbml ${LIBSBML_LIBRARY}-static CHECK::CHECK)
diff --git a/vcpkg/ports/libsbml/usage b/vcpkg/ports/libsbml/usage
new file mode 100644
index 0000000..7fa95b9
--- /dev/null
+++ b/vcpkg/ports/libsbml/usage
@@ -0,0 +1,4 @@
+libsbml provides CMake targets:
+
+ find_package(libsbml CONFIG REQUIRED)
+ target_link_libraries(main PRIVATE libsbml)
diff --git a/vcpkg/ports/libsbml/vcpkg.json b/vcpkg/ports/libsbml/vcpkg.json
new file mode 100644
index 0000000..493bdd5
--- /dev/null
+++ b/vcpkg/ports/libsbml/vcpkg.json
@@ -0,0 +1,96 @@
+{
+ "name": "libsbml",
+ "version": "5.20.4",
+ "description": "A library for reading / writing SBML files",
+ "homepage": "https://github.com/sbmlteam/libsbml",
+ "license": null,
+ "supports": "!uwp & !xbox",
+ "dependencies": [
+ {
+ "name": "vcpkg-cmake",
+ "host": true
+ },
+ {
+ "name": "vcpkg-cmake-config",
+ "host": true
+ }
+ ],
+ "default-features": [
+ "comp",
+ "fbc",
+ "groups",
+ "layout",
+ "libxml2",
+ "render"
+ ],
+ "features": {
+ "bzip2": {
+ "description": "bz2 compression support for libsbml",
+ "dependencies": [
+ "bzip2"
+ ]
+ },
+ "comp": {
+ "description": "support for Hierarchical Model Composition"
+ },
+ "expat": {
+ "description": "libsbml using expat parser",
+ "dependencies": [
+ "expat"
+ ]
+ },
+ "fbc": {
+ "description": "support for Flux Balance Constrant Modeling"
+ },
+ "groups": {
+ "description": "support for Groups"
+ },
+ "layout": {
+ "description": "support for Pathway Layouts"
+ },
+ "libxml2": {
+ "description": "libsbml using libxml2 parser",
+ "dependencies": [
+ {
+ "name": "libxml2",
+ "default-features": false
+ }
+ ]
+ },
+ "multi": {
+ "description": "support for Multistate Modeling"
+ },
+ "namespace": {
+ "description": "Build with the WITH_CPP_NAMESPACE option set to on"
+ },
+ "qual": {
+ "description": "support for Qualitative Modeling"
+ },
+ "render": {
+ "description": "support for Rendering information",
+ "dependencies": [
+ {
+ "name": "libsbml",
+ "default-features": false,
+ "features": [
+ "layout"
+ ]
+ }
+ ]
+ },
+ "test": {
+ "description": "Unit testing of libSBMLs implementation",
+ "supports": "!windows | mingw | (windows & static)",
+ "dependencies": [
+ "check",
+ "dirent"
+ ]
+ },
+ "zlib": {
+ "description": "gzip compression support for libsbml",
+ "dependencies": [
+ "zlib"
+ ]
+ }
+ }
+}
generated by cgit v1.2.3 (git 2.39.1) at 2026-02-15 03:39:22 +0000